.. stk documentation master file, created by
   sphinx-quickstart on Mon Nov 13 11:15:04 2017.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. toctree::
   :hidden:
   :caption: stk
   :maxdepth: 2

   Introduction <introduction>
   Basic Examples <basic_examples>
   Cookbook <cookbook>
   Developer Guide <developer_guide>

.. toctree::
   :hidden:
   :caption: Molecules
   :maxdepth: 2

   Building Block <stk.molecular.molecules.building_block>
   Constructed Molecule <stk.molecular.molecules.constructed_molecule>
   Functional Groups <stk.molecular.functional_groups>
   Populations <stk.populations>

.. toctree::
   :hidden:
   :caption: Topology Graphs
   :maxdepth: 2

   Polymer <stk.molecular.topology_graphs.polymer>
   Organic Cage <stk.molecular.topology_graphs.cage.base>
   Covalent Organic Framework <stk.molecular.topology_graphs.cof>
   Host Guest Complex <stk.molecular.topology_graphs.host_guest>
   Macrocycle <stk.molecular.topology_graphs.macrocycle>
   Rotaxane <stk.molecular.topology_graphs.rotaxane>
   Adding Topology Graphs <stk.molecular.topology_graphs.topology_graph>

.. toctree::
   :hidden:
   :caption: Calculators
   :maxdepth: 2

   Introduction <calculators>
   Optimizers <stk.calculators.optimization.optimizers>
   Energy Calculators <stk.calculators.energy.energy_calculators>
   Compound Calculators <stk.calculators.compound>

.. toctree::
   :hidden:
   :caption: Evolutionary Algorithm
   :maxdepth: 2

   Introduction <ea>
   Fitness Calculators <stk.calculators.ea.fitness_calculators>
   Fitness Normalizers <stk.calculators.ea.fitness_normalizers>
   Selection <stk.calculators.ea.selectors>
   Mutation <stk.calculators.ea.mutators>
   Crossover <stk.calculators.ea.crossers>
   Termination <stk.calculators.ea.terminators>
   Plotting <stk.calculators.ea.plotters>


===================
Welcome to ``stk``!
===================

You are probably looking for the :doc:`introduction`.