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Defines a class for each type of element.

Read the docstring of Atom.

class Ac(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 89¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 227.028¶

class Ag(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 47¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 107.868¶

class Al(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 13¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 26.982¶

class Am(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 95¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 243.061¶

class Ar(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 18¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 39.948¶

class As(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 33¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 74.922¶

class At(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 85¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 209.987¶

class Atom(id, atomic_number, charge=0, **kwargs)¶

Bases: object

Represents an atom.

A subclass is made for each element. The name of each subclass is the periodic table symbol of that element.

Atoms of a particular element can be made with this class or with the subclass representing that element.

atomic_number¶

A class attribute. Specifies the atomic number.

Type: int

mass¶

A class attribute. Specifies the standard atomic weight.

Type: float

id¶

The id of the atom. Should be equal to its index in Molecule.atoms.

Type: int

charge¶

The formal charge of the atom.

Type: int

Examples

Initialization.

Initialization of an Atom can happen in one of two ways. The atom can be initialized through the Atom class or through the class representing the element.

import stk

# h0 is an instance of the H class.
h0 = stk.Atom(id=0, atomic_number=1)

# h1 is also an instance of the H class.
h1 = stk.H(id=1)

When the class correspnding to the element is used directly, the atomic_number is not provided. Here are a few more examples.

# Both he0 and he1 are instances of the He class.
he0 = stk.Atom(id=2, atomic_number=2)
he1 = stk.He(id=3)

# Both c0 and c1 are instances of the
# C class.
c0 = stk.Atom(id=4, atomic_number=6)
c1 = stk.C(id=5)

Adding additional atom attributes.

Each atom can be given additional attributes. For example

c0.custom_attribute = 51
c0.other_attr = 'something'

We can initialize an Atom with additional, custom attributes directly

h2 = stk.H(id=6, custom_attr1=123, other_attr2='thing')
h2.custom_attr1  # Holds 123.
h2.other_attr2  # Holds 'thing'.

Providing the additional attributes to the initializer is functionally equivalent to assigning them to the object manually.

Printing

To print a brief summary of an atom you can run

# Prints C(4).
print(c0)

To print a complete description of an atom, including additional attributes, you can run

# Prints C(4, custom_attribute=51, other_attr='something').
print(repr(c0))

If private attributes were added to an atom, they will not be printed

c0._attr_name = 12
# Prints C(4, custom_attribute=51, other_attr='something').
print(repr(c0))

Methods

clone(self)

Return a clone.

__init__(self, id, atomic_number, charge=0, **kwargs)¶

Initialize an Atom.

Parameters

id (int) – The id of the atom.
atomic_number (int) – The atomic number.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

class Au(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 79¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 196.967¶

class B(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 5¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 10.811¶

class Ba(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 56¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 137.328¶

class Be(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 4¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 9.012¶

class Bh(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 107¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 264¶

class Bi(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 83¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 208.98¶

class Bk(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 97¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 247.07¶

class Br(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 35¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 79.904¶

class C(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 6¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 12.011¶

class Ca(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 20¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 40.078¶

class Cd(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 48¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 112.414¶

class Ce(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 58¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 140.116¶

class Cf(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 98¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 251.08¶

class Cl(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 17¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 35.453¶

class Cm(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 96¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 247.07¶

class Cn(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 112¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 285¶

class Co(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 27¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 58.933¶

class Cr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 24¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 51.996¶

class Cs(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 55¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 132.905¶

class Cu(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 29¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 63.546¶

class Db(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 105¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 262¶

class Ds(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 110¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 281¶

class Dy(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 66¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 162.5¶

class Er(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 68¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 167.259¶

class Es(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 99¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 254¶

class Eu(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 63¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 151.964¶

class F(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 9¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 18.998¶

class Fe(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 26¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 55.845¶

class Fl(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 114¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 289¶

class Fm(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 100¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 257.095¶

class Fr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 87¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 223.02¶

class Ga(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 31¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 69.723¶

class Gd(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 64¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 157.25¶

class Ge(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 32¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 72.631¶

class H(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 1¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 1.008¶

class He(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 2¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 4.003¶

class Hf(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 72¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 178.49¶

class Hg(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 80¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 200.592¶

class Ho(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 67¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 164.93¶

class Hs(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 108¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 269¶

class I(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 53¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 126.904¶

class In(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 49¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 114.818¶

class Ir(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 77¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 192.217¶

class K(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 19¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 39.098¶

class Kr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 36¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 83.798¶

class La(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 57¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 138.905¶

class Li(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 3¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 6.941¶

class Lr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 103¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 262¶

class Lu(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 71¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 174.967¶

class Lv(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 116¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 293¶

class Mc(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 115¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 289¶

class Md(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 101¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 258.1¶

class Mg(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 12¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 24.305¶

class Mn(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 25¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 54.938¶

class Mo(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 42¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 95.95¶

class Mt(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 109¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 278¶

class N(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 7¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 14.007¶

class Na(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 11¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 22.99¶

class Nb(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 41¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 92.906¶

class Nd(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 60¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 144.243¶

class Ne(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 10¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 20.18¶

class Nh(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 113¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 286¶

class Ni(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 28¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 58.693¶

class No(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 102¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 259.101¶

class Np(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 93¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 237.048¶

class O(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 8¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 15.999¶

class Og(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 118¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 294¶

class Os(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 76¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 190.23¶

class P(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 15¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 30.974¶

class Pa(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 91¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 231.036¶

class Pb(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 82¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 207.2¶

class Pd(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 46¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 106.42¶

class Pm(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 61¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 144.913¶

class Po(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 84¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 208.982¶

class Pr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 59¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 140.908¶

class Pt(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 78¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 195.085¶

class Pu(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 94¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 244.064¶

class Ra(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 88¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 226.025¶

class Rb(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 37¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 85.468¶

class Re(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 75¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 186.207¶

class Rf(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 104¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 261¶

class Rg(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 111¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 280¶

class Rh(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 45¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 102.906¶

class Rn(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 86¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 222.018¶

class Ru(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 44¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 101.07¶

class S(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 16¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 32.066¶

class Sb(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 51¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 121.76¶

class Sc(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 21¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 44.956¶

class Se(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 34¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 78.971¶

class Sg(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 106¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 266¶

class Si(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 14¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 28.086¶

class Sm(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 62¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 150.36¶

class Sn(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 50¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 118.711¶

class Sr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 38¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 87.62¶

class Ta(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 73¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 180.948¶

class Tb(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 65¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 158.925¶

class Tc(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 43¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 98.907¶

class Te(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 52¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 127.6¶

class Th(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 90¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 232.038¶

class Ti(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 22¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 47.867¶

class Tl(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 81¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 204.383¶

class Tm(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 69¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 168.934¶

class Ts(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 117¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 294¶

class U(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 92¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 238.029¶

class V(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 23¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 50.942¶

class W(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 74¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 183.84¶

class Xe(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 54¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 131.293¶

class Y(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 39¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 88.906¶

class Yb(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 70¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 173.055¶

class Zn(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 30¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 65.38¶

class Zr(id, charge=0, **kwargs)¶

Bases: stk.molecular.elements.Atom

Methods

clone(self)

Return a clone.

__init__(self, id, charge=0, **kwargs)¶

Initialize an atom of the element.

Parameters

id (int) – The id of the atom.
charge (int) – The formal charge.
**kwargs (object) – Additional attributes to be added to the atom.

atomic_number = 40¶

clone(self)¶

Return a clone.

Private attributes are not passed to the clone.

Returns: The clone.
Return type: Atom

mass = 91.224¶